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This program generates SICHO lattice chains suitable for the
MONSSTER program. It is used by the package
SICHO.pm but may also be used
independently.
The program options are as follows: Either -p
or -n are required to generate a chain
from a PDB file or a completely random chain with
the given number of residues, respectively.
An offset for the generated chain can be set
with -o. Alternatively the chain will be centered
at the origin if -center is given.
For random chains the overall grid size is important to limit
the extension of the chain. It has to be less or equal than
the setting in the MONSSTER program and can be changed with
-g.
If a subset of residues is specified with the -l
option, a random chain will be generated for these residues
within the template for the protein surrounding taken from
the PDB file.
Finally, a specific random seed may be given with -seed
for test purposes to reproduce the same random chains.
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