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Development of multiscale protein modeling methods that combine
low-resolution lattice models with all-atom models.
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Low-resolution models allow fast and efficient
sampling over large areas of configurational space from extended
to near-native protein conformations at limited accuracy.
All-atom models provide
a more accurate energetic description that is particularly useful
in distinguishing near-native structures from
native protein structures but limit extensive conformational
sampling.
A combined multiscale modeling approach using MONSSTER for
lattice chain simulations and CHARMM/Amber for all-atom modeling
is aimed at ab initio protein folding and structure prediction as
well as loop modeling and structure refinement of partially
folded, or distorted near-native structures.
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