This file (00README) briefly lists the contents of the analysis_tutorial/files
directory.

Subdirectory out contains results for all the examples, obtained with charmm33_a2

Files describing the system and input data for the examples:
grx1_solv_min.crd      Solvated coordinates for grx1 protein in TIP3P box
grx1_solv.psf          PSF for above
grx1_solv.trj          1 ns trajectory, saved every 5 ps of this system
par_all22_prot_3.inp     Parameter file
top_all22_prot_cust.inp  RTF

Utilities:
init.str               Stream file used by all examples. Reads PSF,COOR, opens traj...
orient-recenter.inp    First job to run. Creates one recentered, and one protein-only
                       trajectory

The nine examples, to be run as "charmm < fnam.inp > fnam.out":
cluster.inp
hbonds.inp
nmr.inp
phi-psi-dist.inp     NB!! This requires two arguments: NFIRST and NLAST   
rmsd-matrix.inp
rmsd-rgyr.inp
secondary-structure.inp
solvent.inp
trp-anisotropy.inp